3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
6Y6X|1|L5|G|1854
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y6X|1|L5|C|1666
6Y6X|1|L5|G|1667
6Y6X|1|L5|A|1668
6Y6X|1|L5|A|1669
6Y6X|1|L5|G|1670
6Y6X|1|L5|U|1671
*
6Y6X|1|L5|A|1684
6Y6X|1|L5|G|1685
*
6Y6X|1|L5|U|1852
6Y6X|1|L5|G|1853
6Y6X|1|L5|G|1854
6Y6X|1|L5|G|1855
*
6Y6X|1|L5|C|1879
6Y6X|1|L5|G|1880
6Y6X|1|L5|C|1881
6Y6X|1|L5|U|1882
6Y6X|1|L5|G|1883
6Y6X|1|L5|C|1884
*
6Y6X|1|L5|G|1895
6Y6X|1|L5|A|1896
6Y6X|1|L5|A|1897
6Y6X|1|L5|C|1898
6Y6X|1|L5|G|1899
*
6Y6X|1|L5|C|2077
6Y6X|1|L5|C|2078
*
6Y6X|1|L5|G|2278
6Y6X|1|L5|A|2279
6Y6X|1|L5|G|2280
6Y6X|1|L5|U|2281
6Y6X|1|L5|A|2282
6Y6X|1|L5|G|2283

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LC
60S ribosomal protein L4
Chain LF
60S ribosomal protein L7
Chain LL
60S ribosomal protein L13
Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29
Chain Le
60S ribosomal protein L32
Chain Lf
60S ribosomal protein L35a

Coloring options:

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