3D structure

PDB id
6YEF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA
Length
35 nucleotides
Bulged bases
6YEF|1|A|G|575, 6YEF|1|A|G|2048
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YEF|1|A|U|8
6YEF|1|A|U|9
6YEF|1|A|A|10
6YEF|1|A|U|11
6YEF|1|A|U|12
6YEF|1|A|A|13
6YEF|1|A|A|14
6YEF|1|A|G|15
*
6YEF|1|A|U|570
6YEF|1|A|A|571
6YEF|1|A|C|572
6YEF|1|A|A|573
6YEF|1|A|A|574
6YEF|1|A|G|575
6YEF|1|A|U|576
*
6YEF|1|A|A|2045
6YEF|1|A|U|2046
6YEF|1|A|A|2047
6YEF|1|A|G|2048
6YEF|1|A|U|2049
6YEF|1|A|A|2050
*
6YEF|1|A|U|2067
6YEF|1|A|U|2068
6YEF|1|A|A|2069
6YEF|1|A|C|2070
*
6YEF|1|A|G|2652
6YEF|1|A|C|2653
6YEF|1|A|G|2654
6YEF|1|A|U|2655
6YEF|1|A|A|2656
6YEF|1|A|G|2657
*
6YEF|1|A|C|2815
6YEF|1|A|C|2816
*
6YEF|1|A|G|2913
6YEF|1|A|A|2914

Current chains

Chain A
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L32
Chain E
50S ribosomal protein L3
Chain M
50S ribosomal protein L13
Chain T
50S ribosomal protein L20
Chain V
50S ribosomal protein L22

Coloring options:

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