J7_6YEF_002
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GAU*AUGGUAG
- Length
- 33 nucleotides
- Bulged bases
- 6YEF|1|A|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YEF|1|A|C|862
6YEF|1|A|G|863
6YEF|1|A|A|864
6YEF|1|A|A|865
6YEF|1|A|A|866
6YEF|1|A|U|867
*
6YEF|1|A|A|880
6YEF|1|A|G|881
*
6YEF|1|A|U|987
6YEF|1|A|C|988
6YEF|1|A|A|989
6YEF|1|A|G|990
*
6YEF|1|A|C|1015
6YEF|1|A|G|1016
6YEF|1|A|A|1017
6YEF|1|A|A|1018
6YEF|1|A|A|1019
6YEF|1|A|G|1020
*
6YEF|1|A|C|1031
6YEF|1|A|A|1032
6YEF|1|A|G|1033
6YEF|1|A|A|1034
6YEF|1|A|C|1035
*
6YEF|1|A|G|1207
6YEF|1|A|A|1208
6YEF|1|A|U|1209
*
6YEF|1|A|A|1223
6YEF|1|A|U|1224
6YEF|1|A|G|1225
6YEF|1|A|G|1226
6YEF|1|A|U|1227
6YEF|1|A|A|1228
6YEF|1|A|G|1229
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 7
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
Coloring options: