3D structure

PDB id
6YLX (explore in PDB, NAKB, or RNA 3D Hub)
Description
pre-60S State NE1 (TAP-Flag-Nop53)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
6YLX|1|1|G|1116, 6YLX|1|1|A|1159
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YLX|1|1|C|949
6YLX|1|1|G|950
6YLX|1|1|A|951
6YLX|1|1|A|952
6YLX|1|1|G|953
6YLX|1|1|U|954
*
6YLX|1|1|A|967
6YLX|1|1|G|968
*
6YLX|1|1|U|1114
6YLX|1|1|G|1115
6YLX|1|1|G|1116
6YLX|1|1|G|1117
*
6YLX|1|1|C|1141
6YLX|1|1|G|1142
6YLX|1|1|A|1143
6YLX|1|1|U|1144
6YLX|1|1|G|1145
6YLX|1|1|C|1146
*
6YLX|1|1|G|1157
6YLX|1|1|A|1158
6YLX|1|1|A|1159
6YLX|1|1|C|1160
6YLX|1|1|G|1161
*
6YLX|1|1|C|1338
6YLX|1|1|C|1339
*
6YLX|1|1|G|1365
6YLX|1|1|A|1366
6YLX|1|1|G|1367
6YLX|1|1|U|1368
6YLX|1|1|A|1369
6YLX|1|1|G|1370

Current chains

Chain 1
25S rRNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain F
60S ribosomal protein L7-A
Chain e
60S ribosomal protein L32
Chain f
60S ribosomal protein L33-A
Chain w
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase

Coloring options:

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