J7_6YS3_002
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 6YS3|1|b|A|947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YS3|1|b|C|819
6YS3|1|b|G|820
6YS3|1|b|A|821
6YS3|1|b|A|822
6YS3|1|b|A|823
6YS3|1|b|G|824
*
6YS3|1|b|C|837
6YS3|1|b|G|838
6YS3|1|b|C|839
6YS3|1|b|C|840
*
6YS3|1|b|G|942
6YS3|1|b|A|943
6YS3|1|b|G|944
6YS3|1|b|A|945
6YS3|1|b|C|946
6YS3|1|b|A|947
6YS3|1|b|C|948
*
6YS3|1|b|G|973
6YS3|1|b|A|974
6YS3|1|b|A|975
6YS3|1|b|G|976
6YS3|1|b|A|977
6YS3|1|b|G|978
*
6YS3|1|b|C|989
6YS3|1|b|A|990
6YS3|1|b|G|991
6YS3|1|b|A|992
6YS3|1|b|C|993
*
6YS3|1|b|G|1165
6YS3|1|b|C|1166
*
6YS3|1|b|G|1187
6YS3|1|b|G|1188
6YS3|1|b|G|1189
6YS3|1|b|U|1190
6YS3|1|b|A|1191
6YS3|1|b|G|1192
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain 7
- 50S ribosomal protein L35
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
Coloring options: