J7_6YST_001

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6YST|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YST|1|A|C|8
6YST|1|A|G|9
6YST|1|A|A|10
6YST|1|A|C|11
6YST|1|A|U|12
6YST|1|A|A|13
6YST|1|A|A|14
6YST|1|A|G|15
*
6YST|1|A|U|525
6YST|1|A|A|526
6YST|1|A|C|527
6YST|1|A|A|528
6YST|1|A|A|529
6YST|1|A|G|530
6YST|1|A|C|531
*
6YST|1|A|G|2018
6YST|1|A|A|2019
6YST|1|A|A|2020
6YST|1|A|C|2021
6YST|1|A|U|2022
6YST|1|A|C|2023
*
6YST|1|A|G|2040
6YST|1|A|U|2041
6YST|1|A|A|2042
6YST|1|A|C|2043
*
6YST|1|A|G|2625
6YST|1|A|C|2626
6YST|1|A|G|2627
6YST|1|A|C|2628
6YST|1|A|U|2629
6YST|1|A|G|2630
*
6YST|1|A|C|2788
6YST|1|A|C|2789
*
6YST|1|A|G|2894
6YST|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22