J7_6Z1P_001
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUUAAUACG*CUAAAUAC*GAACUUUC*GCAAUAU*AUUACAA*UAAUAA*UUAAUAA
- Length
- 53 nucleotides
- Bulged bases
- 6Z1P|1|Ab|A|425, 6Z1P|1|Ab|C|1740, 6Z1P|1|Ab|A|2485, 6Z1P|1|Ab|U|2486
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Z1P|1|Aa|U|9
6Z1P|1|Aa|U|10
6Z1P|1|Aa|U|11
6Z1P|1|Aa|U|12
6Z1P|1|Aa|A|13
6Z1P|1|Aa|A|14
6Z1P|1|Aa|U|15
6Z1P|1|Aa|A|16
6Z1P|1|Aa|C|17
6Z1P|1|Aa|G|18
*
6Z1P|1|Ab|C|421
6Z1P|1|Ab|U|422
6Z1P|1|Ab|A|423
6Z1P|1|Ab|A|424
6Z1P|1|Ab|A|425
6Z1P|1|Ab|U|426
6Z1P|1|Ab|A|427
6Z1P|1|Ab|C|428
*
6Z1P|1|Ab|G|1737
6Z1P|1|Ab|A|1738
6Z1P|1|Ab|A|1739
6Z1P|1|Ab|C|1740
6Z1P|1|Ab|U|1741
6Z1P|1|Ab|U|1742
6Z1P|1|Ab|U|1743
6Z1P|1|Ab|C|1744
*
6Z1P|1|Ab|G|1757
6Z1P|1|Ab|C|1758
6Z1P|1|Ab|A|1759
6Z1P|1|Ab|A|1760
6Z1P|1|Ab|U|1761
6Z1P|1|Ab|A|1762
6Z1P|1|Ab|U|1763
*
6Z1P|1|Ab|A|2318
6Z1P|1|Ab|U|2319
6Z1P|1|Ab|U|2320
6Z1P|1|Ab|A|2321
6Z1P|1|Ab|C|2322
6Z1P|1|Ab|A|2323
6Z1P|1|Ab|A|2324
*
6Z1P|1|Ab|U|2483
6Z1P|1|Ab|A|2484
6Z1P|1|Ab|A|2485
6Z1P|1|Ab|U|2486
6Z1P|1|Ab|A|2487
6Z1P|1|Ab|A|2488
*
6Z1P|1|Ab|U|2565
6Z1P|1|Ab|U|2566
6Z1P|1|Ab|A|2567
6Z1P|1|Ab|A|2568
6Z1P|1|Ab|U|2569
6Z1P|1|Ab|A|2570
6Z1P|1|Ab|A|2571
Current chains
- Chain Aa
- LSU rRNA_1
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AD
- bL32m
- Chain AU
- mL106
- Chain AV
- Iron-binding zinc finger CDGSH type protein
- Chain Ad
- 50S ribosomal protein L3
- Chain Ao
- 50S ribosomal protein L13
- Chain As
- 50S ribosomal protein L17
- Chain At
- bL19m
- Chain Au
- 50S ribosomal protein L20
- Chain Aw
- Ribosomal protein L22/L17e
Coloring options: