J7_6ZJ3_001
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UCU*A(A2M)UGAC*GGAACAGCAAG*CGAUU*AGGACCC*GC*GUGGCAUACAG
- Length
- 45 nucleotides
- Bulged bases
- 6ZJ3|1|LA|C|32, 6ZJ3|1|LB|G|185, 6ZJ3|1|LB|A|227, 6ZJ3|1|LC|A|534
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LA|U|31
6ZJ3|1|LA|C|32
6ZJ3|1|LA|U|33
*
6ZJ3|1|LB|A|182
6ZJ3|1|LB|A2M|183
6ZJ3|1|LB|U|184
6ZJ3|1|LB|G|185
6ZJ3|1|LB|A|186
6ZJ3|1|LB|C|187
*
6ZJ3|1|LB|G|218
6ZJ3|1|LB|G|219
6ZJ3|1|LB|A|220
6ZJ3|1|LB|A|221
6ZJ3|1|LB|C|222
6ZJ3|1|LB|A|223
6ZJ3|1|LB|G|224
6ZJ3|1|LB|C|225
6ZJ3|1|LB|A|226
6ZJ3|1|LB|A|227
6ZJ3|1|LB|G|228
*
6ZJ3|1|LB|C|235
6ZJ3|1|LB|G|236
6ZJ3|1|LB|A|237
6ZJ3|1|LB|U|238
6ZJ3|1|LB|U|239
*
6ZJ3|1|LB|A|266
6ZJ3|1|LB|G|267
6ZJ3|1|LB|G|268
6ZJ3|1|LB|A|269
6ZJ3|1|LB|C|270
6ZJ3|1|LB|C|271
6ZJ3|1|LB|C|272
*
6ZJ3|1|LB|G|276
6ZJ3|1|LB|C|277
*
6ZJ3|1|LC|G|525
6ZJ3|1|LC|U|526
6ZJ3|1|LC|G|527
6ZJ3|1|LC|G|528
6ZJ3|1|LC|C|529
6ZJ3|1|LC|A|530
6ZJ3|1|LC|U|531
6ZJ3|1|LC|A|532
6ZJ3|1|LC|C|533
6ZJ3|1|LC|A|534
6ZJ3|1|LC|G|535
Current chains
- Chain LA
- 5.8S rRNA
- Chain LB
- LSU rRNA chain 1
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain LX
- Ribosomal protein eL13
- Chain Lb
- Ribosomal protein eL15
- Chain Lp
- Ribosomal protein uL29
- Chain Lx
- Ribosomal protein eL36
- Chain Ly
- Ribosomal protein eL37
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