3D structure

PDB id
6ZME (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
6ZME|1|L5|G|1854
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZME|1|L5|C|1666
6ZME|1|L5|G|1667
6ZME|1|L5|A|1668
6ZME|1|L5|A|1669
6ZME|1|L5|G|1670
6ZME|1|L5|U|1671
*
6ZME|1|L5|A|1684
6ZME|1|L5|G|1685
*
6ZME|1|L5|U|1852
6ZME|1|L5|G|1853
6ZME|1|L5|G|1854
6ZME|1|L5|G|1855
*
6ZME|1|L5|C|1879
6ZME|1|L5|G|1880
6ZME|1|L5|C|1881
6ZME|1|L5|U|1882
6ZME|1|L5|G|1883
6ZME|1|L5|C|1884
*
6ZME|1|L5|G|1895
6ZME|1|L5|A|1896
6ZME|1|L5|A|1897
6ZME|1|L5|C|1898
6ZME|1|L5|G|1899
*
6ZME|1|L5|C|2077
6ZME|1|L5|C|2078
*
6ZME|1|L5|G|2278
6ZME|1|L5|A|2279
6ZME|1|L5|G|2280
6ZME|1|L5|U|2281
6ZME|1|L5|A|2282
6ZME|1|L5|G|2283

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LC
60S ribosomal protein L4
Chain LF
60S ribosomal protein L7
Chain LL
60S ribosomal protein L13
Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29
Chain Le
60S ribosomal protein L32
Chain Lf
60S ribosomal protein L35a

Coloring options:

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