J7_6ZVK_002
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|1853
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|C|1666
6ZVK|1|e2|G|1667
6ZVK|1|e2|A|1668
6ZVK|1|e2|A|1669
6ZVK|1|e2|G|1670
6ZVK|1|e2|U|1671
*
6ZVK|1|e2|A|1684
6ZVK|1|e2|G|1685
*
6ZVK|1|e2|U|1851
6ZVK|1|e2|G|1852
6ZVK|1|e2|G|1853
6ZVK|1|e2|G|1854
*
6ZVK|1|e2|C|1878
6ZVK|1|e2|G|1879
6ZVK|1|e2|C|1880
6ZVK|1|e2|U|1881
6ZVK|1|e2|G|1882
6ZVK|1|e2|C|1883
*
6ZVK|1|e2|G|1894
6ZVK|1|e2|A|1895
6ZVK|1|e2|A|1896
6ZVK|1|e2|C|1897
6ZVK|1|e2|G|1898
*
6ZVK|1|e2|C|2076
6ZVK|1|e2|C|2077
*
6ZVK|1|e2|G|2278
6ZVK|1|e2|A|2279
6ZVK|1|e2|G|2280
6ZVK|1|e2|U|2281
6ZVK|1|e2|A|2282
6ZVK|1|e2|G|2283
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain U2
- uL30
- Chain a7
- 60S ribosomal protein L13
- Chain d2
- 5S ribosomal RNA; 5S rRNA
- Chain q2
- uL15
- Chain r2
- 60S ribosomal protein L29
- Chain v2
- eL32
- Chain x2
- eL33
Coloring options: