J7_7A01_001
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGCU*ACG*CC*GAGUAG
- Length
- 27 nucleotides
- Bulged bases
- 7A01|1|e2|G|1853, 7A01|1|e2|C|1897
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|e2|C|1666
7A01|1|e2|G|1667
7A01|1|e2|A|1668
7A01|1|e2|A|1669
7A01|1|e2|G|1670
7A01|1|e2|U|1671
*
7A01|1|e2|A|1684
7A01|1|e2|G|1685
*
7A01|1|e2|U|1851
7A01|1|e2|G|1852
7A01|1|e2|G|1853
7A01|1|e2|G|1854
*
7A01|1|e2|C|1878
7A01|1|e2|G|1879
7A01|1|e2|C|1880
7A01|1|e2|U|1881
*
7A01|1|e2|A|1896
7A01|1|e2|C|1897
7A01|1|e2|G|1898
*
7A01|1|e2|C|2076
7A01|1|e2|C|2077
*
7A01|1|e2|G|2278
7A01|1|e2|A|2279
7A01|1|e2|G|2280
7A01|1|e2|U|2281
7A01|1|e2|A|2282
7A01|1|e2|G|2283
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain S2
- 60S RIBOSOMAL PROTEIN EL18
- Chain U2
- uL30
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
- Chain r2
- 60S ribosomal protein L29
- Chain t2
- uL4
- Chain v2
- eL32
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