Loop J7_7AC7

3D structure

PDB id: 7AC7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of accomodated trans-translation complex on E. Coli stalled ribosome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.08 Å

Loop

Sequence: GUGCAUGCCGA*UCGUAAAAAGCCGCAAAAAAUAGUC*GAAAACUAC*GCCCUCUCUCC*GGAUCAAGAGAGGUCAAACCCAAAAGAGAUCGCGUGGAAGCCCUGCC*GGCUAGUUUGUUAGUGGCGUGUCCGUCC*GACUGACUAAGCAUGUAGUAC
Length: 152 nucleotides
Bulged bases: 7AC7|1|4|A|80, 7AC7|1|4|A|86, 7AC7|1|4|A|101, 7AC7|1|4|C|104, 7AC7|1|4|A|106, 7AC7|1|4|C|141, 7AC7|1|4|U|172, 7AC7|1|4|A|174, 7AC7|1|4|A|179, 7AC7|1|4|U|182, 7AC7|1|4|C|183, 7AC7|1|4|A|184, 7AC7|1|4|A|185, 7AC7|1|4|C|189, 7AC7|1|4|G|204, 7AC7|1|4|G|205, 7AC7|1|4|G|208, 7AC7|1|4|C|210, 7AC7|1|4|C|211, 7AC7|1|4|G|244, 7AC7|1|4|U|246, 7AC7|1|4|G|303, 7AC7|1|4|A|309
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7AC7|1|4|G|41
7AC7|1|4|U|42
7AC7|1|4|G|43
7AC7|1|4|C|44
7AC7|1|4|A|45
7AC7|1|4|U|46
7AC7|1|4|G|47
7AC7|1|4|C|48
7AC7|1|4|C|49
7AC7|1|4|G|50
7AC7|1|4|A|51
*
7AC7|1|4|U|65
7AC7|1|4|C|66
7AC7|1|4|G|67
7AC7|1|4|U|68
7AC7|1|4|A|69
7AC7|1|4|A|70
7AC7|1|4|A|71
7AC7|1|4|A|72
7AC7|1|4|A|73
7AC7|1|4|G|74
7AC7|1|4|C|75
7AC7|1|4|C|76
7AC7|1|4|G|77
7AC7|1|4|C|78
7AC7|1|4|A|79
7AC7|1|4|A|80
7AC7|1|4|A|81
7AC7|1|4|A|82
7AC7|1|4|A|83
7AC7|1|4|A|84
7AC7|1|4|U|85
7AC7|1|4|A|86
7AC7|1|4|G|87
7AC7|1|4|U|88
7AC7|1|4|C|89
*
7AC7|1|4|G|99
7AC7|1|4|A|100
7AC7|1|4|A|101
7AC7|1|4|A|102
7AC7|1|4|A|103
7AC7|1|4|C|104
7AC7|1|4|U|105
7AC7|1|4|A|106
7AC7|1|4|C|107
*
7AC7|1|4|G|136
7AC7|1|4|C|137
7AC7|1|4|C|138
7AC7|1|4|C|139
7AC7|1|4|U|140
7AC7|1|4|C|141
7AC7|1|4|U|142
7AC7|1|4|C|143
7AC7|1|4|U|144
7AC7|1|4|C|145
7AC7|1|4|C|146
*
7AC7|1|4|G|169
7AC7|1|4|G|170
7AC7|1|4|A|171
7AC7|1|4|U|172
7AC7|1|4|C|173
7AC7|1|4|A|174
7AC7|1|4|A|175
7AC7|1|4|G|176
7AC7|1|4|A|177
7AC7|1|4|G|178
7AC7|1|4|A|179
7AC7|1|4|G|180
7AC7|1|4|G|181
7AC7|1|4|U|182
7AC7|1|4|C|183
7AC7|1|4|A|184
7AC7|1|4|A|185
7AC7|1|4|A|186
7AC7|1|4|C|187
7AC7|1|4|C|188
7AC7|1|4|C|189
7AC7|1|4|A|190
7AC7|1|4|A|191
7AC7|1|4|A|192
7AC7|1|4|A|193
7AC7|1|4|G|194
7AC7|1|4|A|195
7AC7|1|4|G|196
7AC7|1|4|A|197
7AC7|1|4|U|198
7AC7|1|4|C|199
7AC7|1|4|G|200
7AC7|1|4|C|201
7AC7|1|4|G|202
7AC7|1|4|U|203
7AC7|1|4|G|204
7AC7|1|4|G|205
7AC7|1|4|A|206
7AC7|1|4|A|207
7AC7|1|4|G|208
7AC7|1|4|C|209
7AC7|1|4|C|210
7AC7|1|4|C|211
7AC7|1|4|U|212
7AC7|1|4|G|213
7AC7|1|4|C|214
7AC7|1|4|C|215
*
7AC7|1|4|G|243
7AC7|1|4|G|244
7AC7|1|4|C|245
7AC7|1|4|U|246
7AC7|1|4|A|247
7AC7|1|4|G|248
7AC7|1|4|U|249
7AC7|1|4|U|250
7AC7|1|4|U|251
7AC7|1|4|G|252
7AC7|1|4|U|253
7AC7|1|4|U|254
7AC7|1|4|A|255
7AC7|1|4|G|256
7AC7|1|4|U|257
7AC7|1|4|G|258
7AC7|1|4|G|259
7AC7|1|4|C|260
7AC7|1|4|G|261
7AC7|1|4|U|262
7AC7|1|4|G|263
7AC7|1|4|U|264
7AC7|1|4|C|265
7AC7|1|4|C|266
7AC7|1|4|G|267
7AC7|1|4|U|268
7AC7|1|4|C|269
7AC7|1|4|C|270
*
7AC7|1|4|G|293
7AC7|1|4|A|294
7AC7|1|4|C|295
7AC7|1|4|U|296
7AC7|1|4|G|297
7AC7|1|4|A|298
7AC7|1|4|C|299
7AC7|1|4|U|300
7AC7|1|4|A|301
7AC7|1|4|A|302
7AC7|1|4|G|303
7AC7|1|4|C|304
7AC7|1|4|A|305
7AC7|1|4|U|306
7AC7|1|4|G|307
7AC7|1|4|U|308
7AC7|1|4|A|309
7AC7|1|4|G|310
7AC7|1|4|U|311
7AC7|1|4|A|312
7AC7|1|4|C|313

Current chains

Chain 4: transfer-messenger RNA (tmRNA)

Nearby chains

Chain 2: Small subunit ribosomal RNA; SSU rRNA
Chain h: 30S ribosomal protein S3
Chain o: 30S ribosomal protein S10

J7_7AC7_003