J7_7BTB_001

3D structure

PDB id

7BTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.22 Å

Loop

Sequence

CGAAGUUU*AUAG*UGGGC*GCGAUGC*GAACG*CC*GAGUAG

Length

37 nucleotides

Bulged bases

7BTB|1|1|G|1116, 7BTB|1|1|A|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BTB|1|1|C|949
7BTB|1|1|G|950
7BTB|1|1|A|951
7BTB|1|1|A|952
7BTB|1|1|G|953
7BTB|1|1|U|954
7BTB|1|1|U|955
7BTB|1|1|U|956
*
7BTB|1|1|A|965
7BTB|1|1|U|966
7BTB|1|1|A|967
7BTB|1|1|G|968
*
7BTB|1|1|U|1114
7BTB|1|1|G|1115
7BTB|1|1|G|1116
7BTB|1|1|G|1117
7BTB|1|1|C|1118
*
7BTB|1|1|G|1140
7BTB|1|1|C|1141
7BTB|1|1|G|1142
7BTB|1|1|A|1143
7BTB|1|1|U|1144
7BTB|1|1|G|1145
7BTB|1|1|C|1146
*
7BTB|1|1|G|1157
7BTB|1|1|A|1158
7BTB|1|1|A|1159
7BTB|1|1|C|1160
7BTB|1|1|G|1161
*
7BTB|1|1|C|1338
7BTB|1|1|C|1339
*
7BTB|1|1|G|1365
7BTB|1|1|A|1366
7BTB|1|1|G|1367
7BTB|1|1|U|1368
7BTB|1|1|A|1369
7BTB|1|1|G|1370

Current chains

Chain 1

RDN25-1 rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain F

60S ribosomal protein L7-A

Chain T

60S ribosomal protein L21-A

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A

Chain m

Nucleolar GTP-binding protein 2