J7_7CPJ_001

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

7CPJ|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPJ|1|A|C|8
7CPJ|1|A|G|9
7CPJ|1|A|A|10
7CPJ|1|A|C|11
7CPJ|1|A|U|12
7CPJ|1|A|A|13
7CPJ|1|A|A|14
7CPJ|1|A|G|15
*
7CPJ|1|A|U|525
7CPJ|1|A|A|526
7CPJ|1|A|C|527
7CPJ|1|A|A|528
7CPJ|1|A|A|529
7CPJ|1|A|G|530
7CPJ|1|A|C|531
*
7CPJ|1|A|G|2018
7CPJ|1|A|A|2019
7CPJ|1|A|A|2020
7CPJ|1|A|C|2021
7CPJ|1|A|U|2022
7CPJ|1|A|C|2023
*
7CPJ|1|A|G|2040
7CPJ|1|A|U|2041
7CPJ|1|A|A|2042
7CPJ|1|A|C|2043
*
7CPJ|1|A|G|2625
7CPJ|1|A|C|2626
7CPJ|1|A|G|2627
7CPJ|1|A|C|2628
7CPJ|1|A|U|2629
7CPJ|1|A|G|2630
*
7CPJ|1|A|C|2788
7CPJ|1|A|C|2789
*
7CPJ|1|A|G|2894
7CPJ|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22