J7_7D6Z_001

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

7D6Z|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|A|C|8
7D6Z|1|A|G|9
7D6Z|1|A|A|10
7D6Z|1|A|C|11
7D6Z|1|A|U|12
7D6Z|1|A|A|13
7D6Z|1|A|A|14
7D6Z|1|A|G|15
*
7D6Z|1|A|U|525
7D6Z|1|A|A|526
7D6Z|1|A|C|527
7D6Z|1|A|A|528
7D6Z|1|A|A|529
7D6Z|1|A|G|530
7D6Z|1|A|C|531
*
7D6Z|1|A|G|2018
7D6Z|1|A|A|2019
7D6Z|1|A|A|2020
7D6Z|1|A|C|2021
7D6Z|1|A|U|2022
7D6Z|1|A|C|2023
*
7D6Z|1|A|G|2040
7D6Z|1|A|U|2041
7D6Z|1|A|A|2042
7D6Z|1|A|C|2043
*
7D6Z|1|A|G|2625
7D6Z|1|A|C|2626
7D6Z|1|A|G|2627
7D6Z|1|A|C|2628
7D6Z|1|A|U|2629
7D6Z|1|A|G|2630
*
7D6Z|1|A|C|2788
7D6Z|1|A|C|2789
*
7D6Z|1|A|G|2894
7D6Z|1|A|G|2895

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22

Chain a

50S ribosomal protein L32