J7_7JSS_002

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

7JSS|1|1|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JSS|1|1|C|817
7JSS|1|1|G|818
7JSS|1|1|A|819
7JSS|1|1|A|820
7JSS|1|1|A|821
7JSS|1|1|G|822
*
7JSS|1|1|C|835
7JSS|1|1|G|836
7JSS|1|1|C|837
7JSS|1|1|C|838
*
7JSS|1|1|G|940
7JSS|1|1|A|941
7JSS|1|1|G|942
7JSS|1|1|A|943
7JSS|1|1|C|944
7JSS|1|1|A|945
7JSS|1|1|C|946
*
7JSS|1|1|G|971
7JSS|1|1|A|972
7JSS|1|1|A|973
7JSS|1|1|G|974
7JSS|1|1|A|975
7JSS|1|1|G|976
*
7JSS|1|1|C|987
7JSS|1|1|A|988
7JSS|1|1|G|989
7JSS|1|1|A|990
7JSS|1|1|C|991
*
7JSS|1|1|G|1163
7JSS|1|1|C|1164
*
7JSS|1|1|G|1185
7JSS|1|1|G|1186
7JSS|1|1|G|1187
7JSS|1|1|U|1188
7JSS|1|1|A|1189
7JSS|1|1|G|1190

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain E

50S ribosomal protein L35

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21

Chain z

50S ribosomal protein L30