3D structure

PDB id
7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome stalled on long mRNA with ArfB bound in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
7JT2|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7JT2|1|1|C|8
7JT2|1|1|G|9
7JT2|1|1|A|10
7JT2|1|1|C|11
7JT2|1|1|U|12
7JT2|1|1|A|13
7JT2|1|1|A|14
7JT2|1|1|G|15
*
7JT2|1|1|U|525
7JT2|1|1|A|526
7JT2|1|1|C|527
7JT2|1|1|A|528
7JT2|1|1|A|529
7JT2|1|1|G|530
7JT2|1|1|C|531
*
7JT2|1|1|G|2018
7JT2|1|1|A|2019
7JT2|1|1|A|2020
7JT2|1|1|C|2021
7JT2|1|1|U|2022
7JT2|1|1|C|2023
*
7JT2|1|1|G|2040
7JT2|1|1|U|2041
7JT2|1|1|A|2042
7JT2|1|1|C|2043
*
7JT2|1|1|G|2625
7JT2|1|1|C|2626
7JT2|1|1|G|2627
7JT2|1|1|C|2628
7JT2|1|1|U|2629
7JT2|1|1|G|2630
*
7JT2|1|1|C|2788
7JT2|1|1|C|2789
*
7JT2|1|1|G|2894
7JT2|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain s
50S ribosomal protein L22

Coloring options:

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