3D structure

PDB id
7K53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
7K53|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7K53|1|1|C|817
7K53|1|1|G|818
7K53|1|1|A|819
7K53|1|1|A|820
7K53|1|1|A|821
7K53|1|1|G|822
*
7K53|1|1|C|835
7K53|1|1|G|836
7K53|1|1|C|837
7K53|1|1|C|838
*
7K53|1|1|G|940
7K53|1|1|A|941
7K53|1|1|G|942
7K53|1|1|A|943
7K53|1|1|C|944
7K53|1|1|A|945
7K53|1|1|C|946
*
7K53|1|1|G|971
7K53|1|1|A|972
7K53|1|1|A|973
7K53|1|1|G|974
7K53|1|1|A|975
7K53|1|1|G|976
*
7K53|1|1|C|987
7K53|1|1|A|988
7K53|1|1|G|989
7K53|1|1|A|990
7K53|1|1|C|991
*
7K53|1|1|G|1163
7K53|1|1|C|1164
*
7K53|1|1|G|1185
7K53|1|1|G|1186
7K53|1|1|G|1187
7K53|1|1|U|1188
7K53|1|1|A|1189
7K53|1|1|G|1190

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain E
50S ribosomal protein L35
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain z
50S ribosomal protein L30

Coloring options:

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