J7_7K54_001

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

7K54|1|1|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7K54|1|1|C|8
7K54|1|1|G|9
7K54|1|1|A|10
7K54|1|1|C|11
7K54|1|1|U|12
7K54|1|1|A|13
7K54|1|1|A|14
7K54|1|1|G|15
*
7K54|1|1|U|525
7K54|1|1|A|526
7K54|1|1|C|527
7K54|1|1|A|528
7K54|1|1|A|529
7K54|1|1|G|530
7K54|1|1|C|531
*
7K54|1|1|G|2018
7K54|1|1|A|2019
7K54|1|1|A|2020
7K54|1|1|C|2021
7K54|1|1|U|2022
7K54|1|1|C|2023
*
7K54|1|1|G|2040
7K54|1|1|U|2041
7K54|1|1|A|2042
7K54|1|1|C|2043
*
7K54|1|1|G|2625
7K54|1|1|C|2626
7K54|1|1|G|2627
7K54|1|1|C|2628
7K54|1|1|U|2629
7K54|1|1|G|2630
*
7K54|1|1|C|2788
7K54|1|1|C|2789
*
7K54|1|1|G|2894
7K54|1|1|G|2895

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20

Chain s

50S ribosomal protein L22