J7_7M4Y_001

3D structure

PDB id

7M4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAAUUAAG*UACAAGC*GAAAUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

7M4Y|1|A|U|19, 7M4Y|1|A|A|2017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7M4Y|1|A|U|15
7M4Y|1|A|A|16
7M4Y|1|A|A|17
7M4Y|1|A|U|18
7M4Y|1|A|U|19
7M4Y|1|A|A|20
7M4Y|1|A|A|21
7M4Y|1|A|G|22
*
7M4Y|1|A|U|524
7M4Y|1|A|A|525
7M4Y|1|A|C|526
7M4Y|1|A|A|527
7M4Y|1|A|A|528
7M4Y|1|A|G|529
7M4Y|1|A|C|530
*
7M4Y|1|A|G|2014
7M4Y|1|A|A|2015
7M4Y|1|A|A|2016
7M4Y|1|A|A|2017
7M4Y|1|A|U|2018
7M4Y|1|A|C|2019
*
7M4Y|1|A|G|2036
7M4Y|1|A|U|2037
7M4Y|1|A|A|2038
7M4Y|1|A|C|2039
*
7M4Y|1|A|G|2621
7M4Y|1|A|C|2622
7M4Y|1|A|G|2623
7M4Y|1|A|C|2624
7M4Y|1|A|U|2625
7M4Y|1|A|G|2626
*
7M4Y|1|A|C|2784
7M4Y|1|A|C|2785
*
7M4Y|1|A|G|2890
7M4Y|1|A|G|2891

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L13

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32