3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
7M5D|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7M5D|1|1|C|817
7M5D|1|1|G|818
7M5D|1|1|A|819
7M5D|1|1|A|820
7M5D|1|1|A|821
7M5D|1|1|G|822
*
7M5D|1|1|C|835
7M5D|1|1|G|836
7M5D|1|1|C|837
7M5D|1|1|C|838
*
7M5D|1|1|G|940
7M5D|1|1|A|941
7M5D|1|1|G|942
7M5D|1|1|A|943
7M5D|1|1|C|944
7M5D|1|1|A|945
7M5D|1|1|C|946
*
7M5D|1|1|G|971
7M5D|1|1|A|972
7M5D|1|1|A|973
7M5D|1|1|G|974
7M5D|1|1|A|975
7M5D|1|1|G|976
*
7M5D|1|1|C|987
7M5D|1|1|A|988
7M5D|1|1|G|989
7M5D|1|1|A|990
7M5D|1|1|C|991
*
7M5D|1|1|G|1163
7M5D|1|1|C|1164
*
7M5D|1|1|G|1185
7M5D|1|1|G|1186
7M5D|1|1|G|1187
7M5D|1|1|U|1188
7M5D|1|1|A|1189
7M5D|1|1|G|1190

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30
Chain e
50S ribosomal protein L35

Coloring options:

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