J7_7MD7_002

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

7MD7|1|2A|A|945, 7MD7|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MD7|1|2A|C|817
7MD7|1|2A|G|818
7MD7|1|2A|A|819
7MD7|1|2A|A|820
7MD7|1|2A|A|821
7MD7|1|2A|U|822
*
7MD7|1|2A|A|835
7MD7|1|2A|G|836
*
7MD7|1|2A|U|943
7MD7|1|2A|G|944
7MD7|1|2A|A|945
7MD7|1|2A|G|946
*
7MD7|1|2A|C|971
7MD7|1|2A|G|972
7MD7|1|2A|A|973
7MD7|1|2A|G|974
7MD7|1|2A|C|975
7MD7|1|2A|G|975|||A
7MD7|1|2A|C|976
*
7MD7|1|2A|G|987
7MD7|1|2A|A|988
7MD7|1|2A|G|989
7MD7|1|2A|A|990
7MD7|1|2A|C|991
*
7MD7|1|2A|G|1163
7MD7|1|2A|G|1164
*
7MD7|1|2A|C|1185
7MD7|1|2A|G|1186
7MD7|1|2A|G|1187
7MD7|1|2A|U|1188
7MD7|1|2A|A|1189
7MD7|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21