J7_7NBU_001

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

7NBU|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NBU|1|a|C|8
7NBU|1|a|G|9
7NBU|1|a|A|10
7NBU|1|a|C|11
7NBU|1|a|U|12
7NBU|1|a|A|13
7NBU|1|a|A|14
7NBU|1|a|G|15
*
7NBU|1|a|U|525
7NBU|1|a|A|526
7NBU|1|a|C|527
7NBU|1|a|A|528
7NBU|1|a|A|529
7NBU|1|a|G|530
7NBU|1|a|C|531
*
7NBU|1|a|G|2018
7NBU|1|a|A|2019
7NBU|1|a|A|2020
7NBU|1|a|C|2021
7NBU|1|a|U|2022
7NBU|1|a|C|2023
*
7NBU|1|a|G|2040
7NBU|1|a|U|2041
7NBU|1|a|A|2042
7NBU|1|a|C|2043
*
7NBU|1|a|G|2625
7NBU|1|a|C|2626
7NBU|1|a|G|2627
7NBU|1|a|C|2628
7NBU|1|a|U|2629
7NBU|1|a|G|2630
*
7NBU|1|a|C|2788
7NBU|1|a|C|2789
*
7NBU|1|a|G|2894
7NBU|1|a|G|2895

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32