3D structure

PDB id
7NBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
7NBU|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7NBU|1|a|C|817
7NBU|1|a|G|818
7NBU|1|a|A|819
7NBU|1|a|A|820
7NBU|1|a|A|821
7NBU|1|a|G|822
*
7NBU|1|a|C|835
7NBU|1|a|G|836
7NBU|1|a|C|837
7NBU|1|a|C|838
*
7NBU|1|a|G|940
7NBU|1|a|A|941
7NBU|1|a|G|942
7NBU|1|a|A|943
7NBU|1|a|C|944
7NBU|1|a|A|945
7NBU|1|a|C|946
*
7NBU|1|a|G|971
7NBU|1|a|A|972
7NBU|1|a|A|973
7NBU|1|a|G|974
7NBU|1|a|A|975
7NBU|1|a|G|976
*
7NBU|1|a|C|987
7NBU|1|a|A|988
7NBU|1|a|G|989
7NBU|1|a|A|990
7NBU|1|a|C|991
*
7NBU|1|a|G|1163
7NBU|1|a|C|1164
*
7NBU|1|a|G|1185
7NBU|1|a|G|1186
7NBU|1|a|G|1187
7NBU|1|a|U|1188
7NBU|1|a|A|1189
7NBU|1|a|G|1190

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain b
5S ribosomal RNA; 5S rRNA
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:

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