J7_7NHL_001

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA

Length

35 nucleotides

Bulged bases

7NHL|1|A|G|575, 7NHL|1|A|G|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NHL|1|A|U|8
7NHL|1|A|U|9
7NHL|1|A|A|10
7NHL|1|A|U|11
7NHL|1|A|U|12
7NHL|1|A|A|13
7NHL|1|A|A|14
7NHL|1|A|G|15
*
7NHL|1|A|U|570
7NHL|1|A|A|571
7NHL|1|A|C|572
7NHL|1|A|A|573
7NHL|1|A|A|574
7NHL|1|A|G|575
7NHL|1|A|U|576
*
7NHL|1|A|A|2045
7NHL|1|A|U|2046
7NHL|1|A|A|2047
7NHL|1|A|G|2048
7NHL|1|A|U|2049
7NHL|1|A|A|2050
*
7NHL|1|A|U|2067
7NHL|1|A|U|2068
7NHL|1|A|A|2069
7NHL|1|A|C|2070
*
7NHL|1|A|G|2652
7NHL|1|A|C|2653
7NHL|1|A|G|2654
7NHL|1|A|U|2655
7NHL|1|A|A|2656
7NHL|1|A|G|2657
*
7NHL|1|A|C|2815
7NHL|1|A|C|2816
*
7NHL|1|A|G|2913
7NHL|1|A|A|2914

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain H

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20

Chain V

50S ribosomal protein L22