J7_7O7Y_001
3D structure
- PDB id
- 7O7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 7O7Y|1|B5|G|1793
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7O7Y|1|B5|C|1621
7O7Y|1|B5|G|1622
7O7Y|1|B5|A|1623
7O7Y|1|B5|A|1624
7O7Y|1|B5|G|1625
7O7Y|1|B5|U|1626
*
7O7Y|1|B5|A|1639
7O7Y|1|B5|G|1640
*
7O7Y|1|B5|U|1791
7O7Y|1|B5|G|1792
7O7Y|1|B5|G|1793
7O7Y|1|B5|G|1794
*
7O7Y|1|B5|C|1818
7O7Y|1|B5|G|1819
7O7Y|1|B5|OMC|1820
7O7Y|1|B5|U|1821
7O7Y|1|B5|G|1822
7O7Y|1|B5|C|1823
*
7O7Y|1|B5|G|1834
7O7Y|1|B5|A|1835
7O7Y|1|B5|A|1836
7O7Y|1|B5|C|1837
7O7Y|1|B5|G|1838
*
7O7Y|1|B5|C|2016
7O7Y|1|B5|C|2017
*
7O7Y|1|B5|G|2121
7O7Y|1|B5|A|2122
7O7Y|1|B5|G|2123
7O7Y|1|B5|U|2124
7O7Y|1|B5|A|2125
7O7Y|1|B5|G|2126
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BF
- Ribosomal Protein uL30
- Chain BL
- Ribosomal protein eL13
- Chain BQ
- Ribosomal Protein eL18
- Chain BT
- eL21
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
- Chain Be
- eL32
- Chain Bf
- eL33
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