3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
7O7Z|1|B5|G|1793
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7O7Z|1|B5|C|1621
7O7Z|1|B5|G|1622
7O7Z|1|B5|A|1623
7O7Z|1|B5|A|1624
7O7Z|1|B5|G|1625
7O7Z|1|B5|U|1626
*
7O7Z|1|B5|A|1639
7O7Z|1|B5|G|1640
*
7O7Z|1|B5|U|1791
7O7Z|1|B5|G|1792
7O7Z|1|B5|G|1793
7O7Z|1|B5|G|1794
*
7O7Z|1|B5|C|1818
7O7Z|1|B5|G|1819
7O7Z|1|B5|OMC|1820
7O7Z|1|B5|U|1821
7O7Z|1|B5|G|1822
7O7Z|1|B5|C|1823
*
7O7Z|1|B5|G|1834
7O7Z|1|B5|A|1835
7O7Z|1|B5|A|1836
7O7Z|1|B5|C|1837
7O7Z|1|B5|G|1838
*
7O7Z|1|B5|C|2016
7O7Z|1|B5|C|2017
*
7O7Z|1|B5|G|2121
7O7Z|1|B5|A|2122
7O7Z|1|B5|G|2123
7O7Z|1|B5|U|2124
7O7Z|1|B5|A|2125
7O7Z|1|B5|G|2126

Current chains

Chain B5
28S rRNA

Nearby chains

Chain B7
5S ribosomal RNA; 5S rRNA
Chain BC
60S ribosomal protein L4
Chain BF
Ribosomal Protein uL30
Chain BL
Ribosomal protein eL13
Chain BQ
Ribosomal Protein eL18
Chain BT
eL21
Chain Ba
60S ribosomal protein L27a
Chain Bb
60S ribosomal protein L29
Chain Be
eL32
Chain Bf
eL33

Coloring options:

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