J7_7ODE_002

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

7ODE|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ODE|1|I|C|817
7ODE|1|I|G|818
7ODE|1|I|A|819
7ODE|1|I|A|820
7ODE|1|I|A|821
7ODE|1|I|G|822
*
7ODE|1|I|C|835
7ODE|1|I|G|836
7ODE|1|I|C|837
7ODE|1|I|C|838
*
7ODE|1|I|G|940
7ODE|1|I|A|941
7ODE|1|I|G|942
7ODE|1|I|A|943
7ODE|1|I|C|944
7ODE|1|I|A|945
7ODE|1|I|C|946
*
7ODE|1|I|G|971
7ODE|1|I|A|972
7ODE|1|I|A|973
7ODE|1|I|G|974
7ODE|1|I|A|975
7ODE|1|I|G|976
*
7ODE|1|I|C|987
7ODE|1|I|A|988
7ODE|1|I|G|989
7ODE|1|I|A|990
7ODE|1|I|C|991
*
7ODE|1|I|G|1163
7ODE|1|I|C|1164
*
7ODE|1|I|G|1185
7ODE|1|I|G|1186
7ODE|1|I|G|1187
7ODE|1|I|U|1188
7ODE|1|I|A|1189
7ODE|1|I|G|1190

Current chains

Chain I

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L20

Chain Z

50S ribosomal protein L21