3D structure

PDB id
7OIF (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-27 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
7OIF|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OIF|1|1|C|817
7OIF|1|1|G|818
7OIF|1|1|A|819
7OIF|1|1|A|820
7OIF|1|1|A|821
7OIF|1|1|G|822
*
7OIF|1|1|C|835
7OIF|1|1|G|836
7OIF|1|1|C|837
7OIF|1|1|C|838
*
7OIF|1|1|G|940
7OIF|1|1|A|941
7OIF|1|1|G|942
7OIF|1|1|A|943
7OIF|1|1|C|944
7OIF|1|1|A|945
7OIF|1|1|C|946
*
7OIF|1|1|G|971
7OIF|1|1|A|972
7OIF|1|1|A|973
7OIF|1|1|G|974
7OIF|1|1|A|975
7OIF|1|1|G|976
*
7OIF|1|1|C|987
7OIF|1|1|A|988
7OIF|1|1|G|989
7OIF|1|1|A|990
7OIF|1|1|C|991
*
7OIF|1|1|G|1163
7OIF|1|1|C|1164
*
7OIF|1|1|G|1185
7OIF|1|1|G|1186
7OIF|1|1|G|1187
7OIF|1|1|U|1188
7OIF|1|1|A|1189
7OIF|1|1|G|1190

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain K
50S ribosomal protein L15
Chain P
50S ribosomal protein L20
Chain Q
50S ribosomal protein L21
Chain Y
50S ribosomal protein L30
Chain d
50S ribosomal protein L35

Coloring options:

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