J7_7OJ0_001

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

7OJ0|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OJ0|1|a|C|8
7OJ0|1|a|G|9
7OJ0|1|a|A|10
7OJ0|1|a|C|11
7OJ0|1|a|U|12
7OJ0|1|a|A|13
7OJ0|1|a|A|14
7OJ0|1|a|G|15
*
7OJ0|1|a|U|525
7OJ0|1|a|A|526
7OJ0|1|a|C|527
7OJ0|1|a|A|528
7OJ0|1|a|A|529
7OJ0|1|a|G|530
7OJ0|1|a|C|531
*
7OJ0|1|a|G|2018
7OJ0|1|a|A|2019
7OJ0|1|a|A|2020
7OJ0|1|a|C|2021
7OJ0|1|a|U|2022
7OJ0|1|a|C|2023
*
7OJ0|1|a|G|2040
7OJ0|1|a|U|2041
7OJ0|1|a|A|2042
7OJ0|1|a|C|2043
*
7OJ0|1|a|G|2625
7OJ0|1|a|C|2626
7OJ0|1|a|G|2627
7OJ0|1|a|C|2628
7OJ0|1|a|U|2629
7OJ0|1|a|G|2630
*
7OJ0|1|a|C|2788
7OJ0|1|a|C|2789
*
7OJ0|1|a|G|2894
7OJ0|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32