J7_7OTC_001

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

7OTC|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OTC|1|A|C|8
7OTC|1|A|G|9
7OTC|1|A|A|10
7OTC|1|A|C|11
7OTC|1|A|U|12
7OTC|1|A|A|13
7OTC|1|A|A|14
7OTC|1|A|G|15
*
7OTC|1|A|U|525
7OTC|1|A|A|526
7OTC|1|A|C|527
7OTC|1|A|A|528
7OTC|1|A|A|529
7OTC|1|A|G|530
7OTC|1|A|C|531
*
7OTC|1|A|G|2018
7OTC|1|A|A|2019
7OTC|1|A|A|2020
7OTC|1|A|C|2021
7OTC|1|A|U|2022
7OTC|1|A|C|2023
*
7OTC|1|A|G|2040
7OTC|1|A|U|2041
7OTC|1|A|A|2042
7OTC|1|A|C|2043
*
7OTC|1|A|G|2625
7OTC|1|A|C|2626
7OTC|1|A|G|2627
7OTC|1|A|C|2628
7OTC|1|A|U|2629
7OTC|1|A|G|2630
*
7OTC|1|A|C|2788
7OTC|1|A|C|2789
*
7OTC|1|A|G|2894
7OTC|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22