3D structure

PDB id
7PJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
7PJU|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7PJU|1|A|C|817
7PJU|1|A|G|818
7PJU|1|A|A|819
7PJU|1|A|A|820
7PJU|1|A|A|821
7PJU|1|A|G|822
*
7PJU|1|A|C|835
7PJU|1|A|G|836
7PJU|1|A|C|837
7PJU|1|A|C|838
*
7PJU|1|A|G|940
7PJU|1|A|A|941
7PJU|1|A|G|942
7PJU|1|A|A|943
7PJU|1|A|C|944
7PJU|1|A|A|945
7PJU|1|A|C|946
*
7PJU|1|A|G|971
7PJU|1|A|A|972
7PJU|1|A|A|973
7PJU|1|A|G|974
7PJU|1|A|A|975
7PJU|1|A|G|976
*
7PJU|1|A|C|987
7PJU|1|A|A|988
7PJU|1|A|G|989
7PJU|1|A|A|990
7PJU|1|A|C|991
*
7PJU|1|A|G|1163
7PJU|1|A|C|1164
*
7PJU|1|A|G|1185
7PJU|1|A|G|1186
7PJU|1|A|G|1187
7PJU|1|A|U|1188
7PJU|1|A|A|1189
7PJU|1|A|G|1190

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain B
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:

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