J7_7RQ8_002

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

7RQ8|1|1A|A|945, 7RQ8|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQ8|1|1A|C|817
7RQ8|1|1A|G|818
7RQ8|1|1A|A|819
7RQ8|1|1A|A|820
7RQ8|1|1A|A|821
7RQ8|1|1A|U|822
*
7RQ8|1|1A|A|835
7RQ8|1|1A|G|836
*
7RQ8|1|1A|U|943
7RQ8|1|1A|G|944
7RQ8|1|1A|A|945
7RQ8|1|1A|G|946
*
7RQ8|1|1A|C|971
7RQ8|1|1A|G|972
7RQ8|1|1A|A|973
7RQ8|1|1A|G|974
7RQ8|1|1A|C|975
7RQ8|1|1A|G|975|||A
7RQ8|1|1A|C|976
*
7RQ8|1|1A|G|987
7RQ8|1|1A|A|988
7RQ8|1|1A|G|989
7RQ8|1|1A|A|990
7RQ8|1|1A|C|991
*
7RQ8|1|1A|G|1163
7RQ8|1|1A|G|1164
*
7RQ8|1|1A|C|1185
7RQ8|1|1A|G|1186
7RQ8|1|1A|G|1187
7RQ8|1|1A|U|1188
7RQ8|1|1A|A|1189
7RQ8|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21