J7_7RQ9_003

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

7RQ9|1|2A|A|945, 7RQ9|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQ9|1|2A|C|817
7RQ9|1|2A|G|818
7RQ9|1|2A|A|819
7RQ9|1|2A|A|820
7RQ9|1|2A|A|821
7RQ9|1|2A|U|822
*
7RQ9|1|2A|A|835
7RQ9|1|2A|G|836
*
7RQ9|1|2A|U|943
7RQ9|1|2A|G|944
7RQ9|1|2A|A|945
7RQ9|1|2A|G|946
*
7RQ9|1|2A|C|971
7RQ9|1|2A|G|972
7RQ9|1|2A|A|973
7RQ9|1|2A|G|974
7RQ9|1|2A|C|975
7RQ9|1|2A|G|975|||A
7RQ9|1|2A|C|976
*
7RQ9|1|2A|G|987
7RQ9|1|2A|A|988
7RQ9|1|2A|G|989
7RQ9|1|2A|A|990
7RQ9|1|2A|C|991
*
7RQ9|1|2A|G|1163
7RQ9|1|2A|G|1164
*
7RQ9|1|2A|C|1185
7RQ9|1|2A|G|1186
7RQ9|1|2A|G|1187
7RQ9|1|2A|U|1188
7RQ9|1|2A|A|1189
7RQ9|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21