J7_7RQC_001

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

7RQC|1|1A|A|945, 7RQC|1|1A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQC|1|1A|C|817
7RQC|1|1A|G|818
7RQC|1|1A|A|819
7RQC|1|1A|A|820
7RQC|1|1A|A|821
7RQC|1|1A|U|822
*
7RQC|1|1A|A|835
7RQC|1|1A|G|836
*
7RQC|1|1A|U|943
7RQC|1|1A|G|944
7RQC|1|1A|A|945
7RQC|1|1A|G|946
*
7RQC|1|1A|C|971
7RQC|1|1A|G|972
7RQC|1|1A|A|973
7RQC|1|1A|G|974
7RQC|1|1A|C|975
7RQC|1|1A|G|975|||A
7RQC|1|1A|C|976
*
7RQC|1|1A|G|987
7RQC|1|1A|A|988
7RQC|1|1A|G|989
7RQC|1|1A|A|990
7RQC|1|1A|C|991
*
7RQC|1|1A|G|1163
7RQC|1|1A|G|1164
*
7RQC|1|1A|C|1185
7RQC|1|1A|G|1186
7RQC|1|1A|G|1187
7RQC|1|1A|U|1188
7RQC|1|1A|A|1189
7RQC|1|1A|G|1190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30

Chain 18

50S ribosomal protein L35

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21