3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
7RR5|1|C1|G|1116
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7RR5|1|C1|C|949
7RR5|1|C1|G|950
7RR5|1|C1|A|951
7RR5|1|C1|A|952
7RR5|1|C1|G|953
7RR5|1|C1|U|954
*
7RR5|1|C1|A|967
7RR5|1|C1|G|968
*
7RR5|1|C1|U|1114
7RR5|1|C1|G|1115
7RR5|1|C1|G|1116
7RR5|1|C1|G|1117
*
7RR5|1|C1|C|1141
7RR5|1|C1|G|1142
7RR5|1|C1|A|1143
7RR5|1|C1|U|1144
7RR5|1|C1|G|1145
7RR5|1|C1|C|1146
*
7RR5|1|C1|G|1157
7RR5|1|C1|A|1158
7RR5|1|C1|A|1159
7RR5|1|C1|C|1160
7RR5|1|C1|G|1161
*
7RR5|1|C1|C|1338
7RR5|1|C1|C|1339
*
7RR5|1|C1|G|1365
7RR5|1|C1|A|1366
7RR5|1|C1|G|1367
7RR5|1|C1|U|1368
7RR5|1|C1|A|1369
7RR5|1|C1|G|1370

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C4
5S ribosomal RNA; 5S rRNA
Chain LC
RPL4A isoform 1
Chain LF
60S ribosomal protein L7-A
Chain LL
60S ribosomal protein L13
Chain LQ
60S ribosomal protein L18-B
Chain LT
60S ribosomal protein L21-A
Chain La
60S ribosomal protein L28
Chain Lb
RPL29 isoform 1
Chain Le
RPL32 isoform 1
Chain Lf
60S ribosomal protein L33-A

Coloring options:

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