3D structure

PDB id
7SSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGAAAG*CGCC*GAGACACA*UGAAGAG*CAGAC*GC*GGGUAG
Length
38 nucleotides
Bulged bases
7SSN|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7SSN|1|1|C|817
7SSN|1|1|G|818
7SSN|1|1|A|819
7SSN|1|1|A|820
7SSN|1|1|A|821
7SSN|1|1|G|822
*
7SSN|1|1|C|835
7SSN|1|1|G|836
7SSN|1|1|C|837
7SSN|1|1|C|838
*
7SSN|1|1|G|940
7SSN|1|1|A|941
7SSN|1|1|G|942
7SSN|1|1|A|943
7SSN|1|1|C|944
7SSN|1|1|A|945
7SSN|1|1|C|946
7SSN|1|1|A|947
*
7SSN|1|1|U|970
7SSN|1|1|G|971
7SSN|1|1|A|972
7SSN|1|1|A|973
7SSN|1|1|G|974
7SSN|1|1|A|975
7SSN|1|1|G|976
*
7SSN|1|1|C|987
7SSN|1|1|A|988
7SSN|1|1|G|989
7SSN|1|1|A|990
7SSN|1|1|C|991
*
7SSN|1|1|G|1163
7SSN|1|1|C|1164
*
7SSN|1|1|G|1185
7SSN|1|1|G|1186
7SSN|1|1|G|1187
7SSN|1|1|U|1188
7SSN|1|1|A|1189
7SSN|1|1|G|1190

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain E
50S ribosomal protein L35
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain z
50S ribosomal protein L30

Coloring options:

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