J7_7TOP_001
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 7TOP|1|A25S|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOP|1|A25S|C|949
7TOP|1|A25S|G|950
7TOP|1|A25S|A|951
7TOP|1|A25S|A|952
7TOP|1|A25S|G|953
7TOP|1|A25S|U|954
*
7TOP|1|A25S|A|967
7TOP|1|A25S|G|968
*
7TOP|1|A25S|U|1114
7TOP|1|A25S|G|1115
7TOP|1|A25S|G|1116
7TOP|1|A25S|G|1117
*
7TOP|1|A25S|C|1141
7TOP|1|A25S|G|1142
7TOP|1|A25S|A|1143
7TOP|1|A25S|U|1144
7TOP|1|A25S|G|1145
7TOP|1|A25S|C|1146
*
7TOP|1|A25S|G|1157
7TOP|1|A25S|A|1158
7TOP|1|A25S|A|1159
7TOP|1|A25S|C|1160
7TOP|1|A25S|G|1161
*
7TOP|1|A25S|C|1338
7TOP|1|A25S|C|1339
*
7TOP|1|A25S|G|1365
7TOP|1|A25S|A|1366
7TOP|1|A25S|G|1367
7TOP|1|A25S|U|1368
7TOP|1|A25S|A|1369
7TOP|1|A25S|G|1370
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL04
- RPL4A isoform 1
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL18
- 60S ribosomal protein L18-A
- Chain AL21
- 60S ribosomal protein L21-A
- Chain AL28
- 60S ribosomal protein L28
- Chain AL29
- RPL29 isoform 1
- Chain AL32
- RPL32 isoform 1
- Chain AL33
- 60S ribosomal protein L33-A
Coloring options: