J7_7U2J_003

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

7U2J|1|2A|A|945, 7U2J|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7U2J|1|2A|C|817
7U2J|1|2A|G|818
7U2J|1|2A|A|819
7U2J|1|2A|A|820
7U2J|1|2A|A|821
7U2J|1|2A|U|822
*
7U2J|1|2A|A|835
7U2J|1|2A|G|836
*
7U2J|1|2A|U|943
7U2J|1|2A|G|944
7U2J|1|2A|A|945
7U2J|1|2A|G|946
*
7U2J|1|2A|C|971
7U2J|1|2A|G|972
7U2J|1|2A|A|973
7U2J|1|2A|G|974
7U2J|1|2A|C|975
7U2J|1|2A|G|975|||A
7U2J|1|2A|C|976
*
7U2J|1|2A|G|987
7U2J|1|2A|A|988
7U2J|1|2A|G|989
7U2J|1|2A|A|990
7U2J|1|2A|C|991
*
7U2J|1|2A|G|1163
7U2J|1|2A|G|1164
*
7U2J|1|2A|C|1185
7U2J|1|2A|G|1186
7U2J|1|2A|G|1187
7U2J|1|2A|U|1188
7U2J|1|2A|A|1189
7U2J|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21