J7_7V08_001
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- CGAAGUUU*A(PSU)AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- 7V08|1|1|U|954, 7V08|1|1|G|1116
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7V08|1|1|C|949
7V08|1|1|G|950
7V08|1|1|A|951
7V08|1|1|A|952
7V08|1|1|G|953
7V08|1|1|U|954
7V08|1|1|U|955
7V08|1|1|U|956
*
7V08|1|1|A|965
7V08|1|1|PSU|966
7V08|1|1|A|967
7V08|1|1|G|968
*
7V08|1|1|U|1114
7V08|1|1|G|1115
7V08|1|1|G|1116
7V08|1|1|G|1117
*
7V08|1|1|C|1141
7V08|1|1|G|1142
7V08|1|1|A|1143
7V08|1|1|U|1144
7V08|1|1|G|1145
7V08|1|1|C|1146
*
7V08|1|1|G|1157
7V08|1|1|A|1158
7V08|1|1|A|1159
7V08|1|1|C|1160
7V08|1|1|G|1161
*
7V08|1|1|C|1338
7V08|1|1|C|1339
*
7V08|1|1|G|1365
7V08|1|1|A|1366
7V08|1|1|G|1367
7V08|1|1|U|1368
7V08|1|1|A|1369
7V08|1|1|G|1370
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain w
- Ribosome biogenesis regulatory protein
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