J7_7ZJX_001
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CG(OMC)UGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 7ZJX|1|L5|G|1793
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJX|1|L5|C|1621
7ZJX|1|L5|G|1622
7ZJX|1|L5|A|1623
7ZJX|1|L5|A|1624
7ZJX|1|L5|G|1625
7ZJX|1|L5|U|1626
*
7ZJX|1|L5|A|1639
7ZJX|1|L5|G|1640
*
7ZJX|1|L5|U|1791
7ZJX|1|L5|G|1792
7ZJX|1|L5|G|1793
7ZJX|1|L5|G|1794
*
7ZJX|1|L5|C|1818
7ZJX|1|L5|G|1819
7ZJX|1|L5|OMC|1820
7ZJX|1|L5|U|1821
7ZJX|1|L5|G|1822
7ZJX|1|L5|C|1823
*
7ZJX|1|L5|G|1834
7ZJX|1|L5|A|1835
7ZJX|1|L5|A|1836
7ZJX|1|L5|C|1837
7ZJX|1|L5|G|1838
*
7ZJX|1|L5|C|2016
7ZJX|1|L5|C|2017
*
7ZJX|1|L5|G|2121
7ZJX|1|L5|A|2122
7ZJX|1|L5|G|2123
7ZJX|1|L5|U|2124
7ZJX|1|L5|A|2125
7ZJX|1|L5|G|2126
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- 60S ribosomal Protein uL30
- Chain LO
- 60S ribosomal protein eL13
- Chain LT
- 60S ribosomal Protein eL18
- Chain LW
- 60S ribosomal protein L21
- Chain Ld
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L29
- Chain Lh
- Ribosomal protein L32
- Chain Li
- 60S ribosomal protein L35a
Coloring options: