3D structure

PDB id
8A3L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into the binding of bS1 to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.42 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8A3L|1|a|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8A3L|1|a|C|817
8A3L|1|a|G|818
8A3L|1|a|A|819
8A3L|1|a|A|820
8A3L|1|a|A|821
8A3L|1|a|G|822
*
8A3L|1|a|C|835
8A3L|1|a|G|836
8A3L|1|a|C|837
8A3L|1|a|C|838
*
8A3L|1|a|G|940
8A3L|1|a|A|941
8A3L|1|a|G|942
8A3L|1|a|A|943
8A3L|1|a|C|944
8A3L|1|a|A|945
8A3L|1|a|C|946
*
8A3L|1|a|G|971
8A3L|1|a|A|972
8A3L|1|a|A|973
8A3L|1|a|G|974
8A3L|1|a|A|975
8A3L|1|a|G|976
*
8A3L|1|a|C|987
8A3L|1|a|A|988
8A3L|1|a|G|989
8A3L|1|a|A|990
8A3L|1|a|C|991
*
8A3L|1|a|G|1163
8A3L|1|a|C|1164
*
8A3L|1|a|G|1185
8A3L|1|a|G|1186
8A3L|1|a|G|1187
8A3L|1|a|U|1188
8A3L|1|a|A|1189
8A3L|1|a|G|1190

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain b
5S ribosomal RNA; 5S rRNA
Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:

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