J7_8AP4_001

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8AP4|1|a|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AP4|1|a|C|8
8AP4|1|a|G|9
8AP4|1|a|A|10
8AP4|1|a|C|11
8AP4|1|a|U|12
8AP4|1|a|A|13
8AP4|1|a|A|14
8AP4|1|a|G|15
*
8AP4|1|a|U|525
8AP4|1|a|A|526
8AP4|1|a|C|527
8AP4|1|a|A|528
8AP4|1|a|A|529
8AP4|1|a|G|530
8AP4|1|a|C|531
*
8AP4|1|a|G|2018
8AP4|1|a|A|2019
8AP4|1|a|A|2020
8AP4|1|a|C|2021
8AP4|1|a|U|2022
8AP4|1|a|C|2023
*
8AP4|1|a|G|2040
8AP4|1|a|U|2041
8AP4|1|a|A|2042
8AP4|1|a|C|2043
*
8AP4|1|a|G|2625
8AP4|1|a|C|2626
8AP4|1|a|G|2627
8AP4|1|a|C|2628
8AP4|1|a|U|2629
8AP4|1|a|G|2630
*
8AP4|1|a|C|2788
8AP4|1|a|C|2789
*
8AP4|1|a|G|2894
8AP4|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32