J7_8BF7_001

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUGG*CCC*GG

Length

37 nucleotides

Bulged bases

8BF7|1|0|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BF7|1|0|C|8
8BF7|1|0|G|9
8BF7|1|0|A|10
8BF7|1|0|C|11
8BF7|1|0|U|12
8BF7|1|0|A|13
8BF7|1|0|A|14
8BF7|1|0|G|15
*
8BF7|1|0|U|525
8BF7|1|0|A|526
8BF7|1|0|C|527
8BF7|1|0|A|528
8BF7|1|0|A|529
8BF7|1|0|G|530
8BF7|1|0|C|531
*
8BF7|1|0|G|2018
8BF7|1|0|A|2019
8BF7|1|0|A|2020
8BF7|1|0|C|2021
8BF7|1|0|U|2022
8BF7|1|0|C|2023
*
8BF7|1|0|G|2040
8BF7|1|0|U|2041
8BF7|1|0|A|2042
8BF7|1|0|C|2043
*
8BF7|1|0|G|2625
8BF7|1|0|C|2626
8BF7|1|0|G|2627
8BF7|1|0|C|2628
8BF7|1|0|U|2629
8BF7|1|0|G|2630
8BF7|1|0|G|2631
*
8BF7|1|0|C|2787
8BF7|1|0|C|2788
8BF7|1|0|C|2789
*
8BF7|1|0|G|2894
8BF7|1|0|G|2895

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32