J7_8BF7_002

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

8BF7|1|0|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BF7|1|0|C|817
8BF7|1|0|G|818
8BF7|1|0|A|819
8BF7|1|0|A|820
8BF7|1|0|A|821
8BF7|1|0|G|822
*
8BF7|1|0|C|835
8BF7|1|0|G|836
8BF7|1|0|C|837
8BF7|1|0|C|838
*
8BF7|1|0|G|940
8BF7|1|0|A|941
8BF7|1|0|G|942
8BF7|1|0|A|943
8BF7|1|0|C|944
8BF7|1|0|A|945
8BF7|1|0|C|946
*
8BF7|1|0|G|971
8BF7|1|0|A|972
8BF7|1|0|A|973
8BF7|1|0|G|974
8BF7|1|0|A|975
8BF7|1|0|G|976
*
8BF7|1|0|C|987
8BF7|1|0|A|988
8BF7|1|0|G|989
8BF7|1|0|A|990
8BF7|1|0|C|991
*
8BF7|1|0|G|1163
8BF7|1|0|C|1164
*
8BF7|1|0|G|1185
8BF7|1|0|G|1186
8BF7|1|0|G|1187
8BF7|1|0|U|1188
8BF7|1|0|A|1189
8BF7|1|0|G|1190

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain W

50S ribosomal protein L30

Chain d

50S ribosomal protein L35