J7_8BGE_001

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8BGE|1|0|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BGE|1|0|C|8
8BGE|1|0|G|9
8BGE|1|0|A|10
8BGE|1|0|C|11
8BGE|1|0|U|12
8BGE|1|0|A|13
8BGE|1|0|A|14
8BGE|1|0|G|15
*
8BGE|1|0|U|525
8BGE|1|0|A|526
8BGE|1|0|C|527
8BGE|1|0|A|528
8BGE|1|0|A|529
8BGE|1|0|G|530
8BGE|1|0|C|531
*
8BGE|1|0|G|2018
8BGE|1|0|A|2019
8BGE|1|0|A|2020
8BGE|1|0|C|2021
8BGE|1|0|U|2022
8BGE|1|0|C|2023
*
8BGE|1|0|G|2040
8BGE|1|0|U|2041
8BGE|1|0|A|2042
8BGE|1|0|C|2043
*
8BGE|1|0|G|2625
8BGE|1|0|C|2626
8BGE|1|0|G|2627
8BGE|1|0|C|2628
8BGE|1|0|U|2629
8BGE|1|0|G|2630
*
8BGE|1|0|C|2788
8BGE|1|0|C|2789
*
8BGE|1|0|G|2894
8BGE|1|0|G|2895

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32