J7_8BGH_001

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGACC*GGC*GGGUAG

Length

38 nucleotides

Bulged bases

8BGH|1|0|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BGH|1|0|C|817
8BGH|1|0|G|818
8BGH|1|0|A|819
8BGH|1|0|A|820
8BGH|1|0|A|821
8BGH|1|0|G|822
*
8BGH|1|0|C|835
8BGH|1|0|G|836
8BGH|1|0|C|837
8BGH|1|0|C|838
*
8BGH|1|0|G|940
8BGH|1|0|A|941
8BGH|1|0|G|942
8BGH|1|0|A|943
8BGH|1|0|C|944
8BGH|1|0|A|945
8BGH|1|0|C|946
*
8BGH|1|0|G|971
8BGH|1|0|A|972
8BGH|1|0|A|973
8BGH|1|0|G|974
8BGH|1|0|A|975
8BGH|1|0|G|976
*
8BGH|1|0|C|987
8BGH|1|0|A|988
8BGH|1|0|G|989
8BGH|1|0|A|990
8BGH|1|0|C|991
8BGH|1|0|C|992
*
8BGH|1|0|G|1162
8BGH|1|0|G|1163
8BGH|1|0|C|1164
*
8BGH|1|0|G|1185
8BGH|1|0|G|1186
8BGH|1|0|G|1187
8BGH|1|0|U|1188
8BGH|1|0|A|1189
8BGH|1|0|G|1190

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain W

50S ribosomal protein L30

Chain d

50S ribosomal protein L35