J7_8BHJ_001

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CCGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAGG

Length

38 nucleotides

Bulged bases

8BHJ|1|0|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHJ|1|0|C|816
8BHJ|1|0|C|817
8BHJ|1|0|G|818
8BHJ|1|0|A|819
8BHJ|1|0|A|820
8BHJ|1|0|A|821
8BHJ|1|0|G|822
*
8BHJ|1|0|C|835
8BHJ|1|0|G|836
8BHJ|1|0|C|837
8BHJ|1|0|C|838
*
8BHJ|1|0|G|940
8BHJ|1|0|A|941
8BHJ|1|0|G|942
8BHJ|1|0|A|943
8BHJ|1|0|C|944
8BHJ|1|0|A|945
8BHJ|1|0|C|946
*
8BHJ|1|0|G|971
8BHJ|1|0|A|972
8BHJ|1|0|A|973
8BHJ|1|0|G|974
8BHJ|1|0|A|975
8BHJ|1|0|G|976
*
8BHJ|1|0|C|987
8BHJ|1|0|A|988
8BHJ|1|0|G|989
8BHJ|1|0|A|990
8BHJ|1|0|C|991
*
8BHJ|1|0|G|1163
8BHJ|1|0|C|1164
*
8BHJ|1|0|G|1185
8BHJ|1|0|G|1186
8BHJ|1|0|G|1187
8BHJ|1|0|U|1188
8BHJ|1|0|A|1189
8BHJ|1|0|G|1190
8BHJ|1|0|G|1191

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain W

50S ribosomal protein L30

Chain d

50S ribosomal protein L35