3D structure

PDB id
8BIL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.04 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
8BIL|1|0|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BIL|1|0|C|817
8BIL|1|0|G|818
8BIL|1|0|A|819
8BIL|1|0|A|820
8BIL|1|0|A|821
8BIL|1|0|G|822
*
8BIL|1|0|C|835
8BIL|1|0|G|836
8BIL|1|0|C|837
8BIL|1|0|C|838
*
8BIL|1|0|G|940
8BIL|1|0|A|941
8BIL|1|0|G|942
8BIL|1|0|A|943
8BIL|1|0|C|944
8BIL|1|0|A|945
8BIL|1|0|C|946
*
8BIL|1|0|G|971
8BIL|1|0|A|972
8BIL|1|0|A|973
8BIL|1|0|G|974
8BIL|1|0|A|975
8BIL|1|0|G|976
*
8BIL|1|0|C|987
8BIL|1|0|A|988
8BIL|1|0|G|989
8BIL|1|0|A|990
8BIL|1|0|C|991
*
8BIL|1|0|G|1163
8BIL|1|0|C|1164
*
8BIL|1|0|G|1185
8BIL|1|0|G|1186
8BIL|1|0|G|1187
8BIL|1|0|U|1188
8BIL|1|0|A|1189
8BIL|1|0|G|1190

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 1
5S ribosomal RNA; 5S rRNA
Chain I
50S ribosomal protein L15
Chain N
50S ribosomal protein L20
Chain O
50S ribosomal protein L21
Chain W
50S ribosomal protein L30
Chain d
50S ribosomal protein L35

Coloring options:

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