J7_8BIM_001

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

8BIM|1|0|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BIM|1|0|C|8
8BIM|1|0|G|9
8BIM|1|0|A|10
8BIM|1|0|C|11
8BIM|1|0|U|12
8BIM|1|0|A|13
8BIM|1|0|A|14
8BIM|1|0|G|15
*
8BIM|1|0|U|525
8BIM|1|0|A|526
8BIM|1|0|C|527
8BIM|1|0|A|528
8BIM|1|0|A|529
8BIM|1|0|G|530
8BIM|1|0|C|531
*
8BIM|1|0|G|2018
8BIM|1|0|A|2019
8BIM|1|0|A|2020
8BIM|1|0|C|2021
8BIM|1|0|U|2022
8BIM|1|0|C|2023
*
8BIM|1|0|G|2040
8BIM|1|0|U|2041
8BIM|1|0|A|2042
8BIM|1|0|C|2043
*
8BIM|1|0|G|2625
8BIM|1|0|C|2626
8BIM|1|0|G|2627
8BIM|1|0|C|2628
8BIM|1|0|U|2629
8BIM|1|0|G|2630
*
8BIM|1|0|C|2788
8BIM|1|0|C|2789
*
8BIM|1|0|G|2894
8BIM|1|0|G|2895

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32